Hi jordito,
Your question is good because, few minutes ago I tried the USB connection with my MAC mini and it seams the problem dissapear !!
I don't understand, bad firewire cables ???????
I bought a Mac Mini 2011 6 months ago to make music instead of Windows and buy the soundcard MOTU ultralite hybrid to have the system with the less problems (MAC + FIREWIRE + LOGIC) and take my time to make music (instead of driver debugging!!) and the result is a bit disappointing because I have to switch to USB to have stability what is the real problem ?